Stem-loop oni-mir-10653-2

Accession

MI0035537

Description

Oreochromis niloticus oni-mir-10653-2 precursor miRNA

Sequence

2621 reads, 2.0 reads per million, 96 experiments

agcagcugccucuacggugagucugucguccuguagauguggAUACUGGUCUGCAGCUGCUGG
(((((((((.....((((..(((((.((((.....)))))))))))))....)))))))))..

Structure

--         cucua    ga     u    c 
  agcagcugc     cggu  gucug cguc u
  |||||||||     ||||  ||||| |||| g
  UCGUCGACG     GUCA  UAggu guag u
GG         -UCUG    --     -    a 

Annotation confidence Not enough data

Genome context

CM001457.1: 31393485-31393547 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10653-2

Mature oni-miR-10653-5p

• Accession: MIMAT0043147
• Description: Oreochromis niloticus oni-miR-10653-5p mature miRNA
• Sequence: 43 - AUACUGGUCUGCAGCUGCUGG - 63
• Evidence: experimental ; Illumina [1]

Mature oni-miR-10653-2-3p

• Accession: MIMAT0059603
• Description: Oreochromis niloticus oni-miR-10653-2-3p mature miRNA
• Sequence: 43 - AUACUGGUCUGCAGCUGCUGG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774