Stem-loop oni-mir-219d-2

Accession

MI0035541

Description

Oreochromis niloticus oni-mir-219d-2 precursor miRNA

Sequence

17610 reads, 19.0 reads per million, 65 experiments

AGAUGUCCAGGCACAAUUCUcggguuggauuugaaauuucacaAGAAUUGCGUUUGGACAAUCAGC
.(((((((((((.(((((((...((.(((........))))).))))))).)))))))).)))...

Structure

--A   -        A       cgg  u   uuu 
   GAU GUCCAGGC CAAUUCU   gu gga   g
   ||| |||||||| |||||||   || |||    
   CUA CAGGUUUG GUUAAGA   ca cuu   a
CGA   A        C       --a  -   uaa 

Annotation confidence High

Genome context

CM001455.1: 29502991-29503056 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-219d-2

Mature oni-miR-219d-2-5p

• Accession: MIMAT0059673
• Description: Oreochromis niloticus oni-miR-219d-2-5p mature miRNA
• Sequence: 1 - AGAUGUCCAGGCACAAUUCU - 20
• Evidence: experimental ; Illumina [1]

Mature oni-miR-219d-3p

• Accession: MIMAT0043245
• Description: Oreochromis niloticus oni-miR-219d-3p mature miRNA
• Sequence: 44 - AGAAUUGCGUUUGGACAAUCAGC - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774