Stem-loop oni-mir-17b-1

Accession

MI0035550

Description

Oreochromis niloticus oni-mir-17b-1 precursor miRNA

Literature search

2 open access papers mention oni-mir-17b-1
(2 sentences)

Sequence

183609 reads, 299.0 reads per million, 93 experiments

UGUAAGUGCCUCCACUGCAGUAGguauuccauaguacuACCUGCACUGUAAGCACUUUGGC
...((((((...((.(((((..((((((....))))))..))))).))...))))))....

Structure

-UGU      CUC  C     UA      c 
    AAGUGC   CA UGCAG  Gguauu c
    ||||||   || |||||  ||||||  
    UUCACG   GU ACGUC  ucauga a
CGGU      AAU  C     CA      u 

Annotation confidence Medium

Genome context

CM001444.1: 7384948-7385008 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-17b-1

Mature oni-miR-17b-1-5p

• Accession: MIMAT0059771
• Description: Oreochromis niloticus oni-miR-17b-1-5p mature miRNA
• Sequence: 1 - UGUAAGUGCCUCCACUGCAGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature oni-miR-17b-3p

• Accession: MIMAT0043499
• Description: Oreochromis niloticus oni-miR-17b-3p mature miRNA
• Sequence: 39 - ACCUGCACUGUAAGCACUUUGGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774