Stem-loop oni-mir-17b-2

Accession

MI0035572

Description

Oreochromis niloticus oni-mir-17b-2 precursor miRNA

Literature search

2 open access papers mention oni-mir-17b-2
(2 sentences)

Sequence

190643 reads, 308.0 reads per million, 92 experiments

UGAAAGUGCCUUCACUGCAGUagaauugaacaaaacuACCUGCACUGUAAGCACUUUGGC
..(((((((...((.((((((((............))).))))).))...)))))))...

Structure

-UG       CUU  C     -   aauug 
   AAAGUGC   CA UGCAG Uag     a
   |||||||   || ||||| |||      
   UUUCACG   GU ACGUC Auc     a
CGG       AAU  C     C   aaaac 

Annotation confidence Medium

Genome context

GL831311.1: 1392622-1392681 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from oni-mir-17b-2

Mature oni-miR-17b-2-5p

• Accession: MIMAT0059772
• Description: Oreochromis niloticus oni-miR-17b-2-5p mature miRNA
• Sequence: 1 - UGAAAGUGCCUUCACUGCAGU - 21
• Evidence: experimental ; Illumina [1]

Mature oni-miR-17b-3p

• Accession: MIMAT0043499
• Description: Oreochromis niloticus oni-miR-17b-3p mature miRNA
• Sequence: 38 - ACCUGCACUGUAAGCACUUUGGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774