miRBase entry: oni-mir-10975

Stem-loop oni-mir-10975

Accession

MI0035577

Description

Oreochromis niloticus oni-mir-10975 precursor miRNA

Sequence

gucgccuacaggaagacgcgguuuccucagcuuucggaaaagaugggacaaagCGGGAUUCCUGUCGGCGACCUC
((((((.(((((((..(((....(((.((.((((....)))).)))))....)))...))))))).))))))...

Structure

---      u       -ga   gguu   u  g    c 
   gucgcc acaggaa   cgc    ucc ca cuuu g
   |||||| |||||||   |||    ||| || ||||  
   CAGCGG UGUCCUU   GCg    agg gu gaaa g
CUC      C       AGG   aaac   -  a    a

Annotation confidence Not enough data

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Genome context

CM001461.1: 20775583-20775657 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10975

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-10975

Accession	MIMAT0043523
Description	Oreochromis niloticus oni-miR-10975 mature miRNA
Sequence	54 - CGGGAUUCCUGUCGGCGACCUC - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774