Stem-loop oni-mir-181d

Accession

MI0035579

Description

Oreochromis niloticus oni-mir-181d precursor miRNA

Literature search

1 open access papers mention oni-mir-181d
(2 sentences)

Sequence

5558151 reads, 5390.0 reads per million, 106 experiments

AACAUUCAUUGCUGUCGGUGGGuuugcaacagaauaaCUCACUGAUCAAUGAAUGCAG
..(((((((((..(((((((((((...........))))))))))))))))))))...

Structure

-AA         CU           ugca 
   CAUUCAUUG  GUCGGUGGGuu    a
   |||||||||  |||||||||||    c
   GUAAGUAAC  UAGUCACUCaa    a
GAC         --           uaag 

Annotation confidence High

Genome context

CM001455.1: 965174-965231 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-181d

Mature oni-miR-181d-5p

• Accession: MIMAT0043525
• Description: Oreochromis niloticus oni-miR-181d-5p mature miRNA
• Sequence: 1 - AACAUUCAUUGCUGUCGGUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-181d-3p

• Accession: MIMAT0059778
• Description: Oreochromis niloticus oni-miR-181d-3p mature miRNA
• Sequence: 38 - CUCACUGAUCAAUGAAUGCAG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774