Stem-loop mdm-MIR10978a

Accession

MI0035582

Description

Malus domestica mdm-MIR10978a precursor miRNA

Sequence

uauuuccucgaagaaguuaaguccagauguuagagcucaacaacuugcggcaauggauuuaucaauugcccaaguccagucuucucagcaagcuguuucgaaagauuaucaaguuauagggaccucuuuagcuuccgaccgagugcauuuagaagaguuaaagcgggagcgagagcaGUUGGGAAUCGAAGCAUCACGAcuugaagguguucuuuuaaa
.........(((....(((((((..((((((.((.((((((.(((((.((((((.((....)).)))))))))))..(((((((..((((...))))..).)))))).....(((.....)))(((((..(((((((........(........)........))))))))))))..))))))..))..))))))..))))))).....))).......

Structure

uauuuccuc   -gaag       ca      -a  -g      -----------------------------------------------------------------------------------------------------a     c      g  u 
         gaa     uuaaguc  gauguu  ga  cucaac                                                                                                      acuug ggcaau ga u
         |||     |||||||  ||||||  ||  ||||||                                                                                                      ||||| |||||| ||  
         cuu     aguucAG  CUACGA  CU  GGGUUG                                                                                                      ugaac ccguua cu u
--aaauuuu   gugga       CA      AG  AA      acgagagcgagggcgaaauugagaagauuuacgugagccagccuucgauuucuccagggauauugaacuauuagaaagcuuugucgaacgacucuucugacc     -      a  a 

Annotation confidence Not enough data

Genome context

MDC018881.361: 6703-6921 [-]

Mature mdm-miR10978a

• Accession: MIMAT0043527
• Description: Malus domestica mdm-miR10978a mature miRNA
• Sequence: 178 - GUUGGGAAUCGAAGCAUCACGA - 199
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812