Stem-loop mdm-MIR10978b

Accession

MI0035583

Description

Malus domestica mdm-MIR10978b precursor miRNA

Sequence

agaaguuaaguccagauguuagagcucaacaacuuacggcaauggauuuaucaauuacccaaguucggucuucucagcaagcuauuucgaaagauuaucaaguuacagggaccucuuuagcuuccgucugagugcguuuagaagaguuagagcgggagcgagaguaGUUGGGAAUCGAAGCAUCACGAcuugaaggu
.....(((((((..((((((.((.(((((((((((..((.(((.((....)).))).)).))))).((((((...(((........((....)).......)))...)))))).((((.((((((((((((.(.(........)).))))).))))))).))))..))))))..))..))))))..)))))))....

Structure

agaag       ca      -a  -g      aacuuacggcaauggauuuaucaauuacccaaguucggucuucucagcaagcuauuucgaaagauuaucaaguuacagggaccu    a       -     g g guu 
     uuaaguc  gauguu  ga  cucaac                                                                                    cuuu gcuuccg ucuga u c   u
     |||||||  ||||||  ||  ||||||                                                                                    |||| ||||||| ||||| | |    
     aguucAG  CUACGA  CU  GGGUUG                                                                                    gaga cgagggc agauu a g   a
-ugga       CA      AG  AA      ----------------------------------------------------------------------------------au    g       g     g - aag 

Annotation confidence Not enough data

Genome context

MDC018881.351: 4615-4811 [-]

Mature mdm-miR10978b

• Accession: MIMAT0043528
• Description: Malus domestica mdm-miR10978b mature miRNA
• Sequence: 167 - GUUGGGAAUCGAAGCAUCACGA - 188
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812