miRBase entry: mdm-MIR10979

Stem-loop mdm-MIR10979


Accession
MI0035584
Description
Malus domestica mdm-MIR10979 precursor miRNA


Sequence

194 reads, 18.0 reads per million, 26 experiments
aaacuuuucaacuuugagucugaacauccuuaaugucaguagauuauaaagCUUGCCGAUAGAUUUGGGGAGcauccugauccuuguucuggaaauaucuagauaccucaaguguuucaacuccccaauugacauuggcaacucauugcuaucagccucguauaauuuuaacacacguaagcccuuaaaucu
...........(((((((((((.((((.....))))...)))))).))))).((((((((....((((((((......(((.((((.((((((....)))))).....)))).)))....)))))))).....))))))))......(((...)))....................................

Structure
aaacuuuucaacuuugagucugaacauccuuaaugucaguagauuauaaagC        -AGAU        cauccu   c    ----u      a 
                                                    UUGCCGAU     UUGGGGAG      gau cuug     ucugga a
                                                    ||||||||     ||||||||      ||| ||||     ||||||  
                                                    aacgguua     aaccccuc      uug gaac     agaucu u
-ucuaaauucccgaaugcacacaauuuuaauaugcuccgacuaucguuacuc        caguu        --aacu   u    uccau      a 


Annotation confidence Not enough data
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Genome context
MDC008844.651: 2217-2408 [+]

Database links

Mature mdm-miR10979-5p

Accession MIMAT0043529
Description Malus domestica mdm-miR10979-5p mature miRNA
Sequence 52 - CUUGCCGAUAGAUUUGGGGAG - 72
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812