Stem-loop mdm-MIR10980a

Accession

MI0035585

Description

Malus domestica mdm-MIR10980a precursor miRNA

Sequence

aagaugcuuaagucucuggguggaacucccaCACCUGGGACUUGCAGCCAUGuuucccuuaagcaauagggacgggaugcacgagaugcagcaguuggaaacauggcugcaagucucaggugugggaguuccacccagagacuggaacacca
..........(((((((((((((((((((((((((((((((((((((((((((((((((((.....))))(((....((((.....))))...))))))))))))))))))))))))))))))))))))))))))))))))))((....)).

Structure

aagaugcuua                                               cuuaagcaauagg   ggga    c 
          agucucuggguggaacucccaCACCUGGGACUUGCAGCCAUGuuucc             gac    ugca g
          |||||||||||||||||||||||||||||||||||||||||||||||             |||    |||| a
          ucagagacccaccuugaggguguggacucugaacgucgguacaaagg             uug    acgu g
-accacaagg                                               -------------   -acg    a 

Annotation confidence Not enough data

Genome context

MDC009540.166: 985-1136 [+]

Mature mdm-miR10980a

• Accession: MIMAT0043530
• Description: Malus domestica mdm-miR10980a mature miRNA
• Sequence: 32 - CACCUGGGACUUGCAGCCAUG - 52
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812