Stem-loop mdm-MIR3627d

Accession

MI0035589

Description

Malus domestica mdm-MIR3627d precursor miRNA

Literature search

4 open access papers mention mdm-MIR3627d
(9 sentences)

Sequence

gguuaagggauucuugucgcakgagagaugguacgagcuacgcuauggcuaacagcauguUCCAUCCUCCUGUGACAUGAAccccuuuau
....(((((.(((.(((((((.(((.(((((.(((.(((..((....))....))).))).)))))))).))))))).))).)))))...

Structure

gguu     a   u       k   a     u   a   --ac  u 
    aaggg uuc ugucgca gag gaugg acg gcu    gc a
    ||||| ||| ||||||| ||| ||||| ||| |||    ||  
    uuccc AAG ACAGUGU CUC CUACC ugu cga    cg u
-uau     c   U       C   -     U   a   caau  g 

Annotation confidence Not enough data

Genome context

MDC006958.369: 10681-10770 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR3627d

Mature mdm-miR3627d

• Accession: MIMAT0043534
• Description: Malus domestica mdm-miR3627d mature miRNA
• Sequence: 61 - UCCAUCCUCCUGUGACAUGAA - 81
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812