Stem-loop mdm-MIR530b

Accession

MI0035598

Description

Malus domestica mdm-MIR530b precursor miRNA

Literature search

1 open access papers mention mdm-MIR530b
(2 sentences)

Sequence

1432 reads, 288.0 reads per million, 31 experiments

acagcgcagaugccaaaaugaagcuuuuaucUGCAUUUGCACCUGCACUUGUacuaguucuuguuucuuacuuccuugaaaaacccugaaaccaagcuucaaagcauggcaaagguuuuagauguaugagaggaaaaaaaagaagaaaagaggaaaggaauaaaggaauaggaggaaaauggaagucagaaggaagaggaggaacaagcaacAGGUGCAGGUGCAAGUGCAGGUGaaugccauuuuggaucauuaacacca
........(((.((((((((..((.(((((((((((((((((((((((((((.......((((((((((.(((((((........((((((((..(((.........)))...))))))))..................................................((............))..)))))))..))))))))))..))))))))))))))))))))))))))).)))))))))))))..........

Structure

--acagcgca   g        aa  u                           acuaguu          -a       ------------------------------------------------------------gaaaaacc        -aa   uca 
          gau ccaaaaug  gc uuuaucUGCAUUUGCACCUGCACUUGU       cuuguuucuu  cuuccuu                                                                    cugaaacc   gcu   a
          ||| ||||||||  || |||||||||||||||||||||||||||       ||||||||||  |||||||                                                                    ||||||||   |||   a
          cua gguuuuac  cg aaGUGGACGUGAACGUGGACGUGGAca       gaacaaggag  gaaggaa                                                                    gauuuugg   cgg   g
accacaauua   -        --  u                           -----ac          ga       gacugaagguaaaaggaggauaaggaaauaaggaaaggagaaaagaagaaaaaaaaggagaguaugua        aaa   uac 

Annotation confidence High

Genome context

MDC019515.368: 17290-17550 [+]

Mature mdm-miR530b-5p

• Accession: MIMAT0043543
• Description: Malus domestica mdm-miR530b-5p mature miRNA
• Sequence: 32 - UGCAUUUGCACCUGCACUUGU - 52
• Evidence: experimental ; Illumina [1]

Mature mdm-miR530b-3p

• Accession: MIMAT0056752
• Description: Malus domestica mdm-miR530b-3p mature miRNA
• Sequence: 213 - AGGUGCAGGUGCAAGUGCAGGUG - 235
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812