Stem-loop mdm-MIR166j

Accession

MI0035600

Description

Malus domestica mdm-MIR166j precursor miRNA

Literature search

7 open access papers mention mdm-MIR166j
(35 sentences)

Sequence

11860968 reads, 708079.0 reads per million, 31 experiments

auayauuacaaaggaagcuuaucguuuugaggGGAAUGUUGUCUGGUACGAGGcuaauaagucagcaauuccUCGGACCAGGCUUCAUUCCCCucaacuaaugcuuccaucuaauuugccaa
............((((((........((((((((((((..(((((((.(((((.................))))).)))))))..)))))))))))).....))))))..............

Structure

--auayauuacaaa      uuaucguu            UU       A     cuaauaa 
              ggaagc        uugaggGGAAUG  GUCUGGU CGAGG       g
              ||||||        ||||||||||||  ||||||| |||||       u
              ccuucg        aacuCCCCUUAC  CGGACCA GCUcc       c
aaccguuuaaucua      ---uaauc            UU       G     uuaacga 

Annotation confidence High

Genome context

MDC006517.413: 15753-15874 [+]

Mature mdm-miR166j-5p

• Accession: MIMAT0056754
• Description: Malus domestica mdm-miR166j-5p mature miRNA
• Sequence: 33 - GGAAUGUUGUCUGGUACGAGG - 53
• Evidence: experimental ; unknown

Mature mdm-miR166j-3p

• Accession: MIMAT0043545
• Description: Malus domestica mdm-miR166j-3p mature miRNA
• Sequence: 73 - UCGGACCAGGCUUCAUUCCCC - 93
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812