Stem-loop mdm-MIR10984a

Accession

MI0035602

Description

Malus domestica mdm-MIR10984a precursor miRNA

Sequence

uggggaccgcagcuugacccucuuggaggcugaaaucacacuucucgggacagcguacgugaguuuauraGGUAAUUGACUGUGAAAUCGUgguuggyuuccgagauuucugwsuugaaccuaaagacrawwuygucuuaaaaccacuuugcagauauuucaccucagacrgaaaccaaccacgauuucacAGUCAAUUACCUCAUAAACUCaugugugcugucccgagaaggugcgauuucagccuccaagaggaucaagcuccgaaccu
..(((..((.(((((((.(((((((((((((((((((.((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((.(((.(((((.((((...........(((((......)))))............)))).)))))..........))).)))))))))))))))))))))))))))).))))))))))))))))))))))))))).))).))))))))))))))))))).))))))).))..)))

Structure

ug   ac  c       c                   a   -                           r                            y   ---------c     u    -wsuugaaccua     ra 
  ggg  cg agcuuga ccucuuggaggcugaaauc cac uucucgggacagcguacgugaguuuau aGGUAAUUGACUGUGAAAUCGUgguugg uuc          gagau ucug            aagac  w
  |||  || ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||          ||||| ||||            |||||   
  ucc  gc ucgaacu ggagaaccuccgacuuuag gug aagagcccugucguguguaCUCAAAUA UCCAUUAACUGAcacuuuagcaccaacc aag          cuuua agac            uucug  w
--   aa  c       a                   c   g                           C                            a   rcagacucca     u    guuucaccaaaa     yu 

Annotation confidence Not enough data

Genome context

MDC005862.437: 7931-8201 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR10984a

Mature mdm-miR10984a-5p

• Accession: MIMAT0043547
• Description: Malus domestica mdm-miR10984a-5p mature miRNA
• Sequence: 71 - GGUAAUUGACUGUGAAAUCGU - 91
• Evidence: experimental ; Illumina [1]

Mature mdm-miR10984a-3p

• Accession: MIMAT0043548
• Description: Malus domestica mdm-miR10984a-3p mature miRNA
• Sequence: 192 - AGUCAAUUACCUCAUAAACUC - 212
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812