Stem-loop mdm-MIR399k

Accession

MI0035604

Description

Malus domestica mdm-MIR399k precursor miRNA

Literature search

6 open access papers mention mdm-MIR399k
(8 sentences)

Sequence

6377 reads, 509.0 reads per million, 30 experiments

aacaaugagcgaauuaguuguaGGGCCUCUCUCCAGUGGCAGGaaauauaaauggucauggggcauggauuuucuguucucucgugagcuauaaccUGCCAAAGGAGAGUUGCCCUUcgacugcuucugcuuaguu
.....((((((((.((((((.(((((..((((((..(((((((...((((...(.((((((((.(((((...))))).).))))))).))))).)))))))..))))))..))))).)))))).))).)))))...

Structure

aacaa     -   u      u     CU      AG       aaa    aau g       - c     u 
     ugagc gaa uaguug aGGGC  CUCUCC  UGGCAGG   uaua   g ucauggg g augga  
     ||||| ||| |||||| |||||  ||||||  |||||||   ||||   | ||||||| | ||||| u
     auucg cuu gucagc UCCCG  GAGAGG  ACCGUcc   auau   c agugcuc c ugucu  
--uug     u   c      U     UU      AA       --a    --- g       u u     u 

Annotation confidence High

Genome context

MDC018343.157: 12734-12869 [+]

Mature mdm-miR399k-5p

• Accession: MIMAT0056757
• Description: Malus domestica mdm-miR399k-5p mature miRNA
• Sequence: 23 - GGGCCUCUCUCCAGUGGCAGG - 43
• Evidence: experimental ; unknown

Mature mdm-miR399k-3p

• Accession: MIMAT0043550
• Description: Malus domestica mdm-miR399k-3p mature miRNA
• Sequence: 97 - UGCCAAAGGAGAGUUGCCCUU - 117
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812