Stem-loop mdm-MIR10986

Accession

MI0035605

Description

Malus domestica mdm-MIR10986 precursor miRNA

Sequence

aacaaarccgggccggccauuuuucauaccuUGGCACCAAAGUCACCACCCGacuguuaukguauucaauucauccuccaacaaguccgugaucucuaugcgcaaucucuuaauuuaugauaaaauuaacaaagaaaugcuaugaaaagaaaguaguuugcggauagagauaacggacuuguuguacgaugagcugaagaugauaacagucuggugguuacuuuggugccaaggcauacaagauggucaccuuauuuuacu
.........(((..(((((((((..((.(((((((((((((((.((((((.(((((((((.((.((((.((((((...((((((((((((.((((((((.(((((.(((((..(((.(.(((..(((........)))..))).))))..))).)).))))).)))))))).))))))))))))...)))))).)))).)).))))))))).)))))).))))))))))))))).))..))))))))).))).........

Structure

aacaaarcc   cc         uc  a               C      C         k  a    a      cuc            g        g     u  -   aa   a g   aa   aac 
         ggg  ggccauuuu  au ccuUGGCACCAAAGU ACCACC Gacuguuau gu uuca uucauc   caacaaguccgu aucucuau cgcaa cu cuu  uuu u aua  auu   a
         |||  |||||||||  || ||||||||||||||| |||||| ||||||||| || |||| ||||||   |||||||||||| |||||||| ||||| || |||  ||| | |||  |||    
         ucc  cugguagaa  ua ggaaccgugguuuca uggugg cugacaaua ua aagu gaguag   guuguucaggca uagagaua gcguu ga gaa  aaa a uau  uaa   a
ucauuuuau   -a         ca  c               u      u         g  g    c      cau            a        g     u  u   ag   - g   cg   aga 

Annotation confidence Not enough data

Genome context

MDC006251.222: 16890-17150 [+]

Mature mdm-miR10986

• Accession: MIMAT0043551
• Description: Malus domestica mdm-miR10986 mature miRNA
• Sequence: 32 - UGGCACCAAAGUCACCACCCG - 52
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812