Stem-loop mdm-MIR319d

Accession

MI0035606

Description

Malus domestica mdm-MIR319d precursor miRNA

Literature search

4 open access papers mention mdm-MIR319d
(7 sentences)

Sequence

814 reads, 63.0 reads per million, 27 experiments

aaucgaaaggguuguugaaguAACUGCCGACUCAUUCACUCAagcacucaguagagauuaaaggaguguaaacaucagacaauuugcuacugugauugugugaaugaagcggGAGAUAUUUUACAUCCCUCUUUCUC
....(((((((.(((.((((((.((.(((..((((((((.(((.(((..((((((((((....((((....)).))....))))).)))))))).))).))))))))..))).)).))))))))).))))..)))..

Structure

aauc   --    u   u      A  G   AC        U   g   uc     -     aaag  -  g 
    gaa  aggg ugu gaaguA CU CCG  UCAUUCAC CAa cac  aguag agauu    ga gu u
    |||  |||| ||| |||||| || |||  |||||||| ||| |||  ||||| |||||    || ||  
    CUU  UCCC ACA UUUUAU GA ggc  aguaagug guu gug  ucauc uuuaa    cu ca a
--CU   UC    U   -      A  G   ga        u   a   --     g     caga  a  a 

Annotation confidence Not enough data

Genome context

MDC016620.357: 18381-18517 [+]

Mature mdm-miR319d-5p

• Accession: MIMAT0043552
• Description: Malus domestica mdm-miR319d-5p mature miRNA
• Sequence: 22 - AACUGCCGACUCAUUCACUCA - 42
• Evidence: experimental ; Illumina [1]

Mature mdm-miR319d-3p

• Accession: MIMAT0056759
• Description: Malus domestica mdm-miR319d-3p mature miRNA
• Sequence: 113 - GAGAUAUUUUACAUCCCUCUUUCUC - 137
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812