Stem-loop mdm-MIR10989a

Accession

MI0035609

Description

Malus domestica mdm-MIR10989a precursor miRNA

Sequence

agccaagaugaggaaagaggaagauagcaaacugcuuaaggugccacuguggcauagaaaacaccauugucauccucaaggauuuguccaaaugugcaagaagugguaucuaucaauucugcaacaaaaaaggccuuaaugucgagaaggucaaggucaugcccaccgauguaaggaucgacugauauugaaagcuuugguggcuccccauuaucuacugacaacccauagauagauaauggggagccaaCAAAGCUUUUAAUAUCAGUCGAuccucacacuggcggauaagaccuugaacucaucgacaucaaggccuuucuuuucgcagaauugauggaugacauuucuugcgcauuuggacaaauccuugaggaugucaacgguauuucugugccacaguggcaccuuaggcagcuuguucucuuccucucucuuuaacugggcuucuagcuucguuu
((((.((.((((((.(((((((((.(((((.(((((((((((((((((((((((((((((..(((.(((.(((((((((((((((((((((((((((((((((((..(((((((((((((((......(((((((((.(((((((..((.((((((((.((.((.(((.(((.((((((((((((((((((((((((((.((((((((((((((((((((........))).))))))))))))))))).)))))))))))))))))))))))))).))).))).)).)).)))))))).))..))))))).)))))))))......)))))))))))))))..))))))))))))))))))))))))))))))))))).))).))).))))))))))))))))))))))))))))).))))).))))))))).)))))).)).)))).............

Structure

-------------    a  a      a         u     a                             ac   a   u                                   gu               aacaaa         a       ga  g        a  c  a   a   a                          g                 -   aca 
             agcc ag ugagga agaggaaga agcaa cugcuuaaggugccacuguggcauagaaa  acc uug cauccucaaggauuuguccaaaugugcaagaagug  aucuaucaauucugc      aaaggccuu augucga  ag ucaagguc ug cc ccg ugu aggaucgacugauauugaaagcuuug uggcuccccauuaucua cug   a
             |||| || |||||| ||||||||| ||||| |||||||||||||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||  |||||||||||||||      ||||||||| |||||||  || |||||||| || || ||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||    
             ucgg uc auuucu ucuccuucu uuguu gacggauuccacggugacaccgugucuuu  ugg aac guaggaguuccuaaacagguuuacgcguucuuuac  uagguaguuaagacg      uuuccggaa uacagcu  uc aguuccag au gg ggu aca uccuAGCUGACUAUAAUUUUCGAAAC accgagggguaauagau gau   c
uuugcuucgaucu    g  a      c         c     c                             -a   c   u                                   ag               cuuuuc         c       ac  a        a  a  c   c   c                          a                 a   acc 

Annotation confidence Not enough data

Genome context

MDC012210.295: 9960-10420 [+]

Mature mdm-miR10989a

• Accession: MIMAT0043555
• Description: Malus domestica mdm-miR10989a mature miRNA
• Sequence: 251 - CAAAGCUUUUAAUAUCAGUCGA - 272
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812