Stem-loop mdm-MIR10989c

Accession

MI0035611

Description

Malus domestica mdm-MIR10989c precursor miRNA

Sequence

936 reads, 72.0 reads per million, 28 experiments

agcugccuaaagugccacuguggcaaggaaaacaccauugucaucuuuauggauuuguccaacugugcaagaaauggcauccaucaauuaugcaacaagaaaggccucaaugucgaagaggucaagguccugcccacuggugugaggauugacuaaUAUUGAAAGCUUUGGUGGCUuuccguuauccccauuaucuauugaccaccuauagauagauaaauagauagauaauggggauaaugggagccaaCAAAGCUUUUAAUAUCAGUCGAuccuuacaccggcgagcaggaccuugaccuccuggacaucaaggccuuucuugucgcaaaauugauggaugguacuucuugcacauuuggacaaauccuugaggaugucaacaauguuuccgugccacacuggcaccuuagguagcuug
((((((((((.((((((.(((((((.(((((.((...(((.((((((((.((((((((((((.((((((((((.((.((((((((((((.(((.(((((((((((((..(((((.(.((((((((((((((((.(.((((((((((((((((((.(((((((((((((((.((((((.(((((((((((((((((((((......(((....))).......))))))))))))))))))))))))))).))))))))))))))).)))))))))))))))))).).)))))))))))))))).).)))))..))))))))))))).))).)))))))))))).)).)))))))))).)))))))))))).)))))))).)))...))))))).))))))).)))))).))))))))))..

Structure

--          a      c       a     a  cca   u        u            c          a  g            a   a             ca     g a                c a                  a               G      u                     -gaccac   u 
  agcugccuaa gugcca uguggca ggaaa ca   uug caucuuua ggauuuguccaa ugugcaagaa ug cauccaucaauu ugc acaagaaaggccu  auguc a gaggucaagguccugc c cuggugugaggauugacu aUAUUGAAAGCUUUG UGGCUu ccguuauccccauuaucuauu       cua a
  |||||||||| |||||| ||||||| ||||| ||   ||| |||||||| |||||||||||| |||||||||| || |||||||||||| ||| |||||||||||||  ||||| | |||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||       |||  
  ucgauggauu cacggu acaccgu ccuuu gu   aac guaggagu ccuaaacagguu acacguucuu au guagguaguuaa acg uguucuuuccgga  uacag u cuccaguuccaggacg g ggccacauuccuAGCUGA UAUAAUUUUCGAAAC accgag gguaauagggguaauagauag       gau g
gu          c      c       g     -  aac   u        u            u          c  g            a   c             ac     g c                a c                  C               a      -                     auaaaua   a 

Annotation confidence Low

Genome context

MDC018873.313: 10299-10719 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdm-MIR10989c

Mature mdm-miR10989c-5p

• Accession: MIMAT0056764
• Description: Malus domestica mdm-miR10989c-5p mature miRNA
• Sequence: 157 - UAUUGAAAGCUUUGGUGGCU - 176
• Evidence: experimental ; unknown

Mature mdm-miR10989c-3p

• Accession: MIMAT0043557
• Description: Malus domestica mdm-miR10989c-3p mature miRNA
• Sequence: 251 - CAAAGCUUUUAAUAUCAGUCGA - 272
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812