Stem-loop mdm-MIR10989d

Accession

MI0035612

Description

Malus domestica mdm-MIR10989d precursor miRNA

Sequence

aggaagagaacaaauugcuuaaggugccauuguggcacauaaaacaccauugucauugucaaggauuuguccaaaugugcaagaaguggcauccaucaauucugcgacaaaaaagaccuugaugucgagaaggucaaggucaugcccaccgguguaaggaucgacugauauugaaagcuuuguggcuucccauuauccucauuauccccauuaucuacuaacgacccauagauagauaauggggagccaaCAAAGCUUUUAAUAUCAGUCGAuccucacaccggcggguaagaccuugaacucaucgauaucaaggccuuucuucuuguagaauugauggaugacacuucuugcgcauuuggacaaaucuuuaaggaugucaaugguguuuucgugccacaguggcaccuuaagcagcuuguucucuuccucucuccuuaa
(((((((((((((.((((((((((((((((((((((((..((((((((((((.((((.(.((((((((((((((((((((((((((((.((((((((((((((((((.((.((((.((((((((((((..((.((((((((.(((((.(((((((.(((((((((((((((((((((((((((((((((((((((((..............((((((...........)))))))))))))))))))).))))))))))))))))))))))))))).))))))).))))).)))))))).))..)))))))))))).)))).)).)))))))))))))))))).)))))))))))))))))))))))))))).).)))).)))))))))))).)))))))))))))))))))))))).)))))))))))))..........

Structure

----------             a                        au            u    g c                            g                  c  a    a            ga  g        a     a       a                           -              cucauuauccccau      cuaa 
          aggaagagaacaa uugcuuaaggugccauuguggcac  aaaacaccauug cauu u aaggauuuguccaaaugugcaagaagug cauccaucaauucugcga aa aaag ccuugaugucga  ag ucaagguc ugccc ccggugu aggaucgacugauauugaaagcuuugu ggcuucccauuauc              uaucua    c
          ||||||||||||| ||||||||||||||||||||||||  |||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||||||  || |||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||              ||||||    g
          uccuucucuuguu gacgaauuccacggugacaccgug  uuuugugguaac guag a uuucuaaacagguuuacgcguucuucac guagguaguuaagauguu uu uuuc ggaacuauagcu  uc aguuccag auggg ggccaca uccuAGCUGACUAUAAUUUUCGAAACa ccgagggguaauag              auagau    a
aauuccucuc             c                        -c            u    g a                            a                  c  c    c            ac  a        a     c       c                           a              --------------      accc 

Annotation confidence Not enough data

Genome context

MDC018873.313: 4550-4990 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdm-MIR10989d

Mature mdm-miR10989d

• Accession: MIMAT0043558
• Description: Malus domestica mdm-miR10989d mature miRNA
• Sequence: 251 - CAAAGCUUUUAAUAUCAGUCGA - 272
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812