Stem-loop mdm-MIR10990

Accession

MI0035614

Description

Malus domestica mdm-MIR10990 precursor miRNA

Sequence

758 reads, 56.0 reads per million, 27 experiments

accggaggagccgccuucauuaaguuuuacuaggaauggcuugaagauguuuugagcugcuccaaAGAUGUGCUUACCAACAUaggccuuuaucauguuguauaugcaucuuuguucaguuaugauugccauccuuccguccgucgugcauucuuuuagcauugguguucaacaaccaacacacuucacacgacucaaggggagaugucauuucacuuaaggaucuucacaagauaggaagcuugccgauCCAAGGAAAAUUUUAUGACGAgguuguuccuaguguggag
.(((.((((((.((((((((.((((((..((.(((.((((.(((((((.((((((((((...((((((((((..(((.(((((.((......))))))))))..))))))))))..)))...(((.((.((((.((((....((((((.............(((((........))))).........))))))....)))).)))).))..))))))))))))))))).(((........))))))).))).))..)))))).))))..)))).)))))...).)))..

Structure

-a   g ---     c    --    u      ua  a   a    --------------u       g       ------------------------------------------------------------------------------------------------   cuc          CU   C     a  cc 
  ccg a   ggagc gccu  ucau aaguuu  cu gga uggc               ugaagau uuuugag                                                                                                cug   caaAGAUGUG  UAC AACAU gg  u
  ||| |   ||||| ||||  |||| ||||||  || ||| ||||               ||||||| |||||||                                                                                                |||   ||||||||||  ||| ||||| ||   
  ggu u   ccuug uggA  AGUA UUUAAA  GA CCu gccg               acuucua ggaauuc                                                                                                gac   guuucuacgu  aug uugua cu  u
ga   g gau     u    GC    U      AG  A   a    uucgaaggauagaac       -       acuuuacuguagaggggaacucagcacacuucacacaaccaacaacuugugguuacgauuuucuuacgugcugccugccuuccuaccguuaguauu   -uu          au   -     -  au 

Annotation confidence Low

Genome context

MDC009251.399: 540-829 [+]

Mature mdm-miR10990-5p

• Accession: MIMAT0056767
• Description: Malus domestica mdm-miR10990-5p mature miRNA
• Sequence: 66 - AGAUGUGCUUACCAACAU - 83
• Evidence: experimental ; unknown

Mature mdm-miR10990-3p

• Accession: MIMAT0043560
• Description: Malus domestica mdm-miR10990-3p mature miRNA
• Sequence: 251 - CCAAGGAAAAUUUUAUGACGA - 271
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812