miRBase entry: mdm-MIR10991c

Stem-loop mdm-MIR10991c


Accession
MI0035617
Description
Malus domestica mdm-MIR10991c precursor miRNA


Sequence

5683 reads, 414.0 reads per million, 27 experiments
caaaugamuugaguccaaagaucaaaugaucCGAGCCAUUGAAAUUCGAUCCaacggcugcaauuuuuauaacuuuuagaggaccccuuguuuguwgucguuggAUCAAAUUUCAAUGACUCGGAUcauuugaugagugggg
.............((((...(((((((((((((((.((((((((((.(((((((((((.((((...............((((...))))..)))).))))))))))).)))))))))).)))))))))))))))...)))).

Structure
caaaugamuugag    aag               C          C           u    uuuuuauaacuuuua    a 
             ucca   aucaaaugaucCGAG CAUUGAAAUU GAUCCaacggc gcaa               gagg  
             ||||   ||||||||||||||| |||||||||| ||||||||||| ||||               |||| c
             gggu   uaguuuacUAGGCUC GUAACUUUAA CUAgguugcug uguu               uucc  
------------g    gag               A          A           w    -------------ug    c 


Annotation confidence Medium
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Genome context
MDC000600.449: 4580-4721 [+]

Database links

Mature mdm-miR10991c-5p

Accession MIMAT0043563
Description Malus domestica mdm-miR10991c-5p mature miRNA
Sequence 32 - CGAGCCAUUGAAAUUCGAUCC - 52
Evidence experimental
Illumina [1]

Mature mdm-miR10991c-3p

Accession MIMAT0056770
Description Malus domestica mdm-miR10991c-3p mature miRNA
Sequence 105 - AUCAAAUUUCAAUGACUCGGAU - 126
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812