Stem-loop mdm-MIR10991e

Accession

MI0035619

Description

Malus domestica mdm-MIR10991e precursor miRNA

Sequence

7001 reads, 497.0 reads per million, 27 experiments

acuaguuuccuuucuuuaggaaccggauccccuucggacccaaaugaauugaguccaaagaucaaaugaucCGAGCCAUUGAAAUUCGAUCCaacggcugcaauuuuuauaacuuuuagaggaccccuuguuuguagucguuggAUCAAAUUUCAAUGACUCGGAUcauuugaugagugggcucaguuucuuuggaucccgaagggauccgguuccuauuuuuuaaaacauag
.(((((((........(((((((((((((((.((((((.(((((.((((((((((((...(((((((((((((((.((((((((((.((((((((((((((((...............((((...))))..)))))))))))))))).)))))))))).)))))))))))))))...)))))))))))).))))).).)))))))))))))))))))).......)))).)))

Structure

a   -    ccuuucuu               c     - c     u            aag               C          C                uuuuuauaacuuuua    a 
 cua guuu        uaggaaccggauccc uucgg a ccaaa gaauugagucca   aucaaaugaucCGAG CAUUGAAAUU GAUCCaacggcugcaa               gagg  
 ||| ||||        ||||||||||||||| ||||| | ||||| ||||||||||||   ||||||||||||||| |||||||||| ||||||||||||||||               |||| c
 gau caaa        auccuuggccuaggg aagcc u gguuu uuugacucgggu   uaguuuacUAGGCUC GUAACUUUAA CUAgguugcugauguu               uucc  
-   a    -auuuuuu               -     c a     c            gag               A          A                -------------ug    c 

Annotation confidence Medium

Genome context

MDC008417.255: 2027-2259 [+]

Mature mdm-miR10991e-5p

• Accession: MIMAT0043565
• Description: Malus domestica mdm-miR10991e-5p mature miRNA
• Sequence: 72 - CGAGCCAUUGAAAUUCGAUCC - 92
• Evidence: experimental ; Illumina [1]

Mature mdm-miR10991e-3p

• Accession: MIMAT0056772
• Description: Malus domestica mdm-miR10991e-3p mature miRNA
• Sequence: 145 - AUCAAAUUUCAAUGACUCGGAU - 166
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812