Stem-loop mdm-MIR319e

Accession

MI0035621

Description

Malus domestica mdm-MIR319e precursor miRNA

Literature search

4 open access papers mention mdm-MIR319e
(7 sentences)

Sequence

265062 reads, 27104.0 reads per million, 32 experiments

aucuuagagauaguuugaaguGAGCUUUCUUCAGUCCACUCauggaagggcaaaggguuugaauuagcugccgacucauucauucaaacucaguagaaauggaguggauauuucuacugugaaugugugaaugaugcgggagauaacuucauucuuuucuucucugugcUUGGACUGAAGGGAGCUCCCUUuuacugucuucuuugu
......((((((((..((((.(((((((((((((((((..((((((.(((.((((((..(((((((.((.(((..((((((((.((..(.(((((((((((.......))))))))))).)..)).))))))))..))).)).))).)))).))))))))).))))))..))))))))))))))))).)))).))))))))......

Structure

aucuua        uu    u                 CU      a   c      uu    -   g  g   ac        u  aa u           ga 
      gagauagu  gaag GAGCUUUCUUCAGUCCA  Caugga ggg aaaggg  ugaa uua cu ccg  ucauucau ca  c caguagaaaug  g
      ||||||||  |||| |||||||||||||||||  |||||| ||| ||||||  |||| ||| || |||  |||||||| ||  | |||||||||||  u
      uucuguca  uUUC CUCGAGGGAAGUCAGGU  gugucu uuc uuuucu  acuu aau ga ggc  aguaagug gu  g gucaucuuuau  g
uguuuc        -u    C                 Uc      c   -      -u    c   a  g   gu        u  aa u           ag 

Annotation confidence High

Genome context

MDC002990.685: 6834-7040 [+]

Mature mdm-miR319e-5p

• Accession: MIMAT0043567
• Description: Malus domestica mdm-miR319e-5p mature miRNA
• Sequence: 22 - GAGCUUUCUUCAGUCCACUC - 41
• Evidence: experimental ; Illumina [1]

Mature mdm-miR319e-3p

• Accession: MIMAT0056774
• Description: Malus domestica mdm-miR319e-3p mature miRNA
• Sequence: 170 - UUGGACUGAAGGGAGCUCCCUU - 191
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812