Stem-loop mdm-MIR319f

Accession

MI0035622

Description

Malus domestica mdm-MIR319f precursor miRNA

Literature search

4 open access papers mention mdm-MIR319f
(7 sentences)

Sequence

gaucuuagagauaguuuraguGAGCUUUCUUCAGUCCACUCauggaagggcaaaggguuugaauuagcugccgacucauucauucaaacucaguagaaauggaguggauauuucwacugugaaugugugaaugaugcgggagauaacuucauucuuuucuucucugugcuuggacugaagggagcucccuuuuacugucuucuuugu
.......((((((((...((.(((((((((((((((((..((((((.(((.((((((..(((((((.((.(((..((((((((.((..(.((((.((((((.......)))))).)))).)..)).))))))))..))).)).))).)))).))))))))).))))))..))))))))))))))))).))...))))))))......

Structure

gaucuua        uur  u                 CU      a   c      uu    -   g  g   ac        u  aa u    a      ga 
       gagauagu   ag GAGCUUUCUUCAGUCCA  Caugga ggg aaaggg  ugaa uua cu ccg  ucauucau ca  c cagu gaaaug  g
       ||||||||   || |||||||||||||||||  |||||| ||| ||||||  |||| ||| || |||  |||||||| ||  | |||| ||||||  u
       uucuguca   uc cucgagggaagucaggu  gugucu uuc uuuucu  acuu aau ga ggc  aguaagug gu  g guca cuuuau  g
-uguuuc        uuu  c                 uc      c   -      -u    c   a  g   gu        u  aa u    w      ag 

Annotation confidence Not enough data

Genome context

MDC009430.318: 14032-14238 [-]

Mature mdm-miR319f

• Accession: MIMAT0043568
• Description: Malus domestica mdm-miR319f mature miRNA
• Sequence: 22 - GAGCUUUCUUCAGUCCACUC - 41
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812