Stem-loop mdm-MIR319f

Accession

MI0035622

Description

Malus domestica mdm-MIR319f precursor miRNA

Literature search

4 open access papers mention mdm-MIR319f
(7 sentences)

Sequence

265050 reads, 27098.0 reads per million, 32 experiments

gaucuuagagauaguuuraguGAGCUUUCUUCAGUCCACUCauggaagggcaaaggguuugaauuagcugccgacucauucauucaaacucaguagaaauggaguggauauuucwacugugaaugugugaaugaugcgggagauaacuucauucuuuucuucucugugcUUGGACUGAAGGGAGCUCCCUUuuacugucuucuuugu
.......((((((((...((.(((((((((((((((((..((((((.(((.((((((..(((((((.((.(((..((((((((.((..(.((((.((((((.......)))))).)))).)..)).))))))))..))).)).))).)))).))))))))).))))))..))))))))))))))))).))...))))))))......

Structure

gaucuua        uur  u                 CU      a   c      uu    -   g  g   ac        u  aa u    a      ga 
       gagauagu   ag GAGCUUUCUUCAGUCCA  Caugga ggg aaaggg  ugaa uua cu ccg  ucauucau ca  c cagu gaaaug  g
       ||||||||   || |||||||||||||||||  |||||| ||| ||||||  |||| ||| || |||  |||||||| ||  | |||| ||||||  u
       uucuguca   UC CUCGAGGGAAGUCAGGU  gugucu uuc uuuucu  acuu aau ga ggc  aguaagug gu  g guca cuuuau  g
-uguuuc        uuU  C                 Uc      c   -      -u    c   a  g   gu        u  aa u    w      ag 

Annotation confidence High

Genome context

MDC009430.318: 14032-14238 [-]

Mature mdm-miR319f-5p

• Accession: MIMAT0043568
• Description: Malus domestica mdm-miR319f-5p mature miRNA
• Sequence: 22 - GAGCUUUCUUCAGUCCACUC - 41
• Evidence: experimental ; Illumina [1]

Mature mdm-miR319f-3p

• Accession: MIMAT0056775
• Description: Malus domestica mdm-miR319f-3p mature miRNA
• Sequence: 170 - UUGGACUGAAGGGAGCUCCCUU - 191
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812