Stem-loop mdm-MIR10993b

Accession

MI0035625

Description

Malus domestica mdm-MIR10993b precursor miRNA

Sequence

auuguauuauauaucccuagguuuggagaaacuuuuaguuguaacgggaacacgggugguacacuacguguuuuuauguaaguggugggaaauuuuauuuuuuaaguuauuaacuuuuuaacacucauAUCCCACCAUUUAUAUAGCGAcacgugauguaacacucugugugacgrucacacugaaaaaucucuucuagauuuggggagguaaggcau
..(((.((((...((((((((((((((((...(((((((.((....(..(((((((((.((((.((((((((.(((((((((((((((((.............(((((...))))).............))))))))))))))))).)))))))).)))).))).))))))..)....)))))))))....)).)))))))))))))).)))).))).

Structure

au   a    aua              -  -aac       u  aacg ga      -   g    c        u                 aauuuuauuuuuu     a 
  ugu uuau   ucccuagguuugga ga    uuuuagu gu    g  acacgg gug uaca uacguguu uuauguaagugguggga             aaguu  
  ||| ||||   |||||||||||||| ||    ||||||| ||    |  |||||| ||| |||| |||||||| |||||||||||||||||             ||||| u
  acg aaug   agggguuuagaucu cu    aaaguca ca    c  uguguc cac augu gugcacAG GAUAUAUUUACCACCCU             uucaa  
-u   g    --g              u  cuaa       -  curg ag      u   a    a        C                 Auacucacaauuu     u 

Annotation confidence Not enough data

Genome context

MDC013544.206: 25032-25249 [-]

Mature mdm-miR10993b

• Accession: MIMAT0043571
• Description: Malus domestica mdm-miR10993b mature miRNA
• Sequence: 129 - AUCCCACCAUUUAUAUAGCGA - 149
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812