Stem-loop mdm-MIR10994

Accession

MI0035626

Description

Malus domestica mdm-MIR10994 precursor miRNA

Sequence

acugugugcaauguggugugcaauagccauacaguuuuuaguucucaucuugccggucagaagcacgcugcUAUGGUUAAGAAACAAGCAGAagccgaaguagcaacuagaggcccuauuacugcuuccuaaaacucaaaauuccgcguugaauuaaguuuyggauuucuaauugcuacuucggcuuuUGCUUUUUUCUUGACCAUAGCagcaugcuucugaucggcgagaugagaacuaauaucuguauguuuauugcacacguucacauucugac
.........(((((((((((((((((.(((((((...((((((((((((((((((((((((((((.((((((((((((((((((.(((((((((((((((((((((.((((((.............(((..(((((...(((((......))))).))))).))))))))).))))))))))))))))))))).)))))))))))))))))).))))))))))))))))))))))))))))...))))))).)))))))))))...)))))).....

Structure

acugugugc      ---           c       uuu                            c                  C                     c      cccuauuacugcu   ua     caa     cg 
         aaugug   gugugcaauag cauacag   uuaguucucaucuugccggucagaagca gcugcUAUGGUUAAGAAA AAGCAGAagccgaaguagcaa uagagg             ucc  aaacu   aauuc  c
         ||||||   ||||||||||| |||||||   |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||             |||  |||||   |||||   
         uuacac   cacacguuauu guauguc   aaucaagaguagagcggcuagucuucgu cgaCGAUACCAGUUCUUU UUCGUuuucggcuucaucguu aucuuu             agg  uuuga   uuaag  g
----caguc      uug           u       uau                            a                  U                     a      -------------   -y     --a     uu 

Annotation confidence Not enough data

Genome context

MDC013407.145: 2590-2866 [+]

Mature mdm-miR10994-5p

• Accession: MIMAT0043572
• Description: Malus domestica mdm-miR10994-5p mature miRNA
• Sequence: 72 - UAUGGUUAAGAAACAAGCAGA - 92
• Evidence: experimental ; Illumina [1]

Mature mdm-miR10994-3p

• Accession: MIMAT0043573
• Description: Malus domestica mdm-miR10994-3p mature miRNA
• Sequence: 189 - UGCUUUUUUCUUGACCAUAGC - 209
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812