Stem-loop mdm-MIR169g

Accession

MI0035628

Description

Malus domestica mdm-MIR169g precursor miRNA

Literature search

4 open access papers mention mdm-MIR169g
(9 sentences)

Sequence

cugaagucuugcaugcaaacaugagauaauaaugugugcugCAGCCAAGGAUGACUUGCCGGaagcaaccaacuucuccucuucuucuguuauuuacagguauauaauauguucaucaaauaaaauuggcucuuagggguaaaacguacguuaaagaaaauuaguucagaucauagguuacgauuuguuuagcuaccaacgccagcguuaacaucguggauuaguggcauuuaggaagaaguagguguguuuucgacaggugauuaccggcaaguugucccuggcuacaugucugucucauguuuacauguu
..........(((((.((((((((((((...((((((.....(((((.((((((((((((((((((((((.(((((((((.....(((((.....))))).......................((((((.((((.((.(((.....))).)).))))...))))))((((((.........))))))....(((((.....(((.((.......)))))....)))))....))).)))))).))).)))))))....(((....))))))))))))))).))))))))))).)))))))))))).))))).

Structure

cugaagucuu     c            aua      gcugC     A            --------------       -   a      -   -----------------------cuucuucuguuauuuacagguauauaauauguucaucaaauaa      --c    a  g   a 
          gcaug aaacaugagaua   augugu     AGCCA GGAUGACUUGCC              GGaagca acc acuucu ccu                                                                  aauugg   ucuu gg gua a
          ||||| ||||||||||||   ||||||     ||||| ||||||||||||              ||||||| ||| |||||| |||                                                                  ||||||   |||| || ||| a
          uguac uuuguacucugu   uguaca     ucggu ccuguugaacgg              cuuuugu ugg ugaaga gga                                                                  uugauu   agaa uu cau c
---------u     a            --c      -----     c            ccauuaguggacag       g   a      a   uuuacggugauuaggugcuacaauugcgaccgcaaccaucgauuuguuuagcauuggauacuagac      aaa    a  g   g 

Annotation confidence Not enough data

Genome context

MDC011517.596: 5517-5828 [+]

Mature mdm-miR169g

• Accession: MIMAT0043575
• Description: Malus domestica mdm-miR169g mature miRNA
• Sequence: 42 - CAGCCAAGGAUGACUUGCCGG - 62
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812