Stem-loop mdm-MIR169i

Accession

MI0035630

Description

Malus domestica mdm-MIR169i precursor miRNA

Literature search

5 open access papers mention mdm-MIR169i
(10 sentences)

Sequence

519 reads, 219.0 reads per million, 32 experiments

uuucaucuuaagucuugcaugugggaaugagguaugcagugCAGCCAAGGAUGACUUGCCGGcagcaauauauauucaguuacaauauuauauaucaaccckuaucuucuauauauauguauauguacauwgcauauauaugggauguaucauguauauauguugaugucaucucaugcauauawgruacagaaagauacacgaucuugugacaaugagaugguCGGCAAGUCGUCUCUGGCUACauuuuugccuccuuuucucaugcuagauuguuaugauga
..(((((...(((((.(((((.(((((.((((((...((((.(((((.(((((((((((((((..((((((((((.(((.((((......................((((((((((((((...........)))))))))))))))))).).)).))))))))))....(((((((((((((............((((.....)))))))).).))))))))))))))))))))))).))))).))))..)))))).))))).))))).))))).....)))))

Structure

uu     --uua     u     u     u      ugc    C     A               agcaauauauauucaguuacaauauuauauaucaaccckuaucuucuauauauauguauauguacauwgcauauauaugggauguaucauguauauauguugaugu        - -    uawgruacagaa    a 
  ucauc     agucu gcaug gggaa gaggua   agug AGCCA GGAUGACUUGCCGGc                                                                                                          caucucau g caua            agau c
  |||||     ||||| ||||| ||||| ||||||   |||| ||||| |||||||||||||||                                                                                                          |||||||| | ||||            |||| a
  aguag     uuaga cguac cuuuu cuccgu   uuaC UCGGU UCUGCUGAACGGCug                                                                                                          guagagua c gugu            ucua c
--     uauug     u     u     c      -uu    A     C               ----------------------------------------------------------------------------------------------------------        a a    ------------    g 

Annotation confidence High

Genome context

MDC021880.124: 31614-31897 [-]

Mature mdm-miR169i-5p

• Accession: MIMAT0043577
• Description: Malus domestica mdm-miR169i-5p mature miRNA
• Sequence: 42 - CAGCCAAGGAUGACUUGCCGG - 62
• Evidence: experimental ; Illumina [1]

Mature mdm-miR169i-3p

• Accession: MIMAT0056780
• Description: Malus domestica mdm-miR169i-3p mature miRNA
• Sequence: 225 - CGGCAAGUCGUCUCUGGCUAC - 245
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812