miRBase entry: mdm-MIR10995

Stem-loop mdm-MIR10995


Accession
MI0035632
Description
Malus domestica mdm-MIR10995 precursor miRNA


Sequence

654 reads, 55.0 reads per million, 27 experiments
cuucaaacuccugcagcugguCAAGCUUCCUCUUCAUACUCGUugaguaauuaguugcgaguaugugcaacucuuuagucucgugccuaagcauucuaaucucuugacgaagacuaaccaucucagcaaucaaagacucaaccuaacgagaucgagcgagaaggCGUUGGCCCAUGUUUGAUACUgagg
(((((...((..(((...((((((((((.((((((((.((((((((((..((.((((((((.(((.(.......((((((((((......................))).)))))))))))))).))))).))..))))).....))))))).))).))).)))).))))))..)))..))...)))))

Structure
     aac  cu   gcu      -    C   -   -  A     -----     aa  a     -   u   u caacucu       -   gccuaagcau 
cuuca   uc  gca   gguCAA GCUU CUC UUC AU CUCGU     ugagu  uu guugc gag aug g       uuagucu cgu          u
|||||   ||  |||   |||||| |||| ||| ||| || |||||     |||||  || ||||| ||| ||| |       ||||||| |||           
ggagU   AG  UGU   CCGGUU Cgga gag gag ua gagca     acuca  aa uaacg cuc uac c       aaucaga gca          c
     CAU  UU   -AC      G    a   c   c  -     aucca     ga  c     a   -   - -------       a   guucucuaau 


Annotation confidence Low
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Genome context
MDC011311.340: 48019-48207 [-]

Database links

Mature mdm-miR10995-5p

Accession MIMAT0043579
Description Malus domestica mdm-miR10995-5p mature miRNA
Sequence 22 - CAAGCUUCCUCUUCAUACUCGU - 43
Evidence experimental
Illumina [1]

Mature mdm-miR10995-3p

Accession MIMAT0056782
Description Malus domestica mdm-miR10995-3p mature miRNA
Sequence 165 - CGUUGGCCCAUGUUUGAUACU - 185
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812