Stem-loop mdm-MIR10995

Accession

MI0035632

Description

Malus domestica mdm-MIR10995 precursor miRNA

Sequence

cuucaaacuccugcagcugguCAAGCUUCCUCUUCAUACUCGUugaguaauuaguugcgaguaugugcaacucuuuagucucgugccuaagcauucuaaucucuugacgaagacuaaccaucucagcaaucaaagacucaaccuaacgagaucgagcgagaaggcguuggcccauguuugauacugagg
(((((...((..(((...((((((((((.((((((((.((((((((((..((.((((((((.(((.(.......((((((((((......................))).)))))))))))))).))))).))..))))).....))))))).))).))).)))).))))))..)))..))...)))))

Structure

     aac  cu   gcu      -    C   -   -  A     -----     aa  a     -   u   u caacucu       -   gccuaagcau 
cuuca   uc  gca   gguCAA GCUU CUC UUC AU CUCGU     ugagu  uu guugc gag aug g       uuagucu cgu          u
|||||   ||  |||   |||||| |||| ||| ||| || |||||     |||||  || ||||| ||| ||| |       ||||||| |||           
ggagu   ag  ugu   ccgguu cgga gag gag ua gagca     acuca  aa uaacg cuc uac c       aaucaga gca          c
     cau  uu   -ac      g    a   c   c  -     aucca     ga  c     a   -   - -------       a   guucucuaau 

Annotation confidence Not enough data

Genome context

MDC011311.340: 48019-48207 [-]

Mature mdm-miR10995

• Accession: MIMAT0043579
• Description: Malus domestica mdm-miR10995 mature miRNA
• Sequence: 22 - CAAGCUUCCUCUUCAUACUCGU - 43
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812