Stem-loop mdm-MIR10996a

Accession

MI0035633

Description

Malus domestica mdm-MIR10996a precursor miRNA

Sequence

uucucgagaagagcugacaugcaacugagaugcuaaggugaugguauuccaaaccaaccaugcuaugucauguugaaaaguuaaaacauaugacgguuugwgaugggcuugaaaugccaACACCAUCGCAUCUCAUGUUCCacguaaguuacucuccacu
.....((((..((((.((.((.(((((((((((...((((.(((((((.(((.(((.(((.(((..(((((((..............)))))))))).)).).)))..))).))))))).))))...)))))))).))).)).)).))))..))))....

Structure

uucuc    ag    g  a  c   -        uaa    a       c   -a   a -  u   au       ugaaaa 
     gaga  agcu ac ug aac ugagaugc   ggug ugguauu caa  cca c ca gcu  gucaugu      g
     ||||  |||| || || ||| ||||||||   |||| ||||||| |||  ||| | || |||  |||||||       
     cucu  uuga ug aC UUG ACUCUACG   CCAC accguaa guu  ggu g gu ugg  caguaua      u
-ucac    ca    a  c  C   U        CUA    A       a   cg   a w  u   --       caaaau 

Annotation confidence Not enough data

Genome context

MDC010449.276: 6773-6932 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR10996a

Mature mdm-miR10996a

• Accession: MIMAT0043580
• Description: Malus domestica mdm-miR10996a mature miRNA
• Sequence: 120 - ACACCAUCGCAUCUCAUGUUCC - 141
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812