Stem-loop mdm-MIR171p

Accession

MI0035635

Description

Malus domestica mdm-MIR171p precursor miRNA

Literature search

9 open access papers mention mdm-MIR171p
(40 sentences)

Sequence

36736 reads, 1851.0 reads per million, 28 experiments

uuuugauggagaaaguugugaauacauagcaaagguauuggcgcgcCUCAAUUUGAACGCGUGGCUAauaucggagacuuagccauacgauucuaaUUGAGCCGCGUCAAUAUCUCCuuuugcaucuuucuccauccaucccuuca
....(((((((((((.((((((.....((...(((((((((((((.(((((((.(((((.((((((((..........)))))))).)).))).))))))).))))))))))))).)))))))).)))))))))))..........

Structure

------uuuu           u      uacau  caa             c       U   -  C        uauc 
          gauggagaaag ugugaa     ag   agguauuggcgcg CUCAAUU GAA CG GUGGCUAa    g
          ||||||||||| ||||||     ||   ||||||||||||| ||||||| ||| || ||||||||     
          cuaccucuuuc acguuu     uC   UCUAUAACUGCGC GAGUUaa cuu gc uaccgauu    g
acuucccuac           u      -----  --C             C       u   a  a        caga 

Annotation confidence Low

Genome context

MDC015454.116: 3728-3873 [+]

Mature mdm-miR171p-5p

• Accession: MIMAT0056785
• Description: Malus domestica mdm-miR171p-5p mature miRNA
• Sequence: 47 - CUCAAUUUGAACGCGUGGCUA - 67
• Evidence: experimental ; unknown

Mature mdm-miR171p-3p

• Accession: MIMAT0043582
• Description: Malus domestica mdm-miR171p-3p mature miRNA
• Sequence: 97 - UUGAGCCGCGUCAAUAUCUCC - 117
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812