Stem-loop mdm-MIR393g

Accession

MI0035636

Description

Malus domestica mdm-MIR393g precursor miRNA

Literature search

6 open access papers mention mdm-MIR393g
(31 sentences)

Sequence

56604 reads, 3667.0 reads per million, 32 experiments

uauauugcaacuagaggaggcaUCCAAAGGGAUCGCAUUGAUCccagcuagcuauuucuuuccaucguuugguuuggAUCAUGCUAUCCCUUUGGAUUucuccuuuggaagcuucaa
......((..((((((((((.((((((((((((.((((.(((((.(((((((..............).)))))).))))))))).)))))))))))).))))))))))..)).....

Structure

uauauu  aa          c            C    U     c      - uauuuc 
      gc  cuagaggagg aUCCAAAGGGAU GCAU GAUCc agcuag c      u
      ||  |||||||||| |||||||||||| |||| ||||| |||||| |       
      cg  gguuuccucu UAGGUUUCCCUA CGUA CUAgg uugguu g      u
-aacuu  aa          U            U    -     u      u cuaccu 

Annotation confidence High

Genome context

MDC012340.117: 7899-8015 [+]

Mature mdm-miR393g-5p

• Accession: MIMAT0056786
• Description: Malus domestica mdm-miR393g-5p mature miRNA
• Sequence: 23 - UCCAAAGGGAUCGCAUUGAUC - 43
• Evidence: experimental ; unknown

Mature mdm-miR393g-3p

• Accession: MIMAT0043583
• Description: Malus domestica mdm-miR393g-3p mature miRNA
• Sequence: 78 - AUCAUGCUAUCCCUUUGGAUU - 98
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812