Stem-loop mdm-MIR393h

Accession

MI0035637

Description

Malus domestica mdm-MIR393h precursor miRNA

Literature search

6 open access papers mention mdm-MIR393h
(31 sentences)

Sequence

56617 reads, 3674.0 reads per million, 32 experiments

uuaauugcuucuagaggaggcaUCCAAAGGGAUCGCAUUGAUCccagcuaacuauuuauguccaucgcuugguuuggAUCAUGCUAUCCCUUUGGAUUucuccuuuggaagcuucaa
......((((((((((((((.((((((((((((.((((.(((((.((((((.................)))))).))))))))).)))))))))))).)))))))))))))).....

Structure

uuaauu              c            C    U     c      cuauuua 
      gcuucuagaggagg aUCCAAAGGGAU GCAU GAUCc agcuaa       u
      |||||||||||||| |||||||||||| |||| ||||| ||||||       g
      cgaagguuuccucu UAGGUUUCCCUA CGUA CUAgg uugguu       u
-aacuu              U            U    -     u      cgcuacc 

Annotation confidence High

Genome context

MDC012883.431: 61501-61617 [-]

Mature mdm-miR393h-5p

• Accession: MIMAT0056787
• Description: Malus domestica mdm-miR393h-5p mature miRNA
• Sequence: 23 - UCCAAAGGGAUCGCAUUGAUC - 43
• Evidence: experimental ; unknown

Mature mdm-miR393h-3p

• Accession: MIMAT0043584
• Description: Malus domestica mdm-miR393h-3p mature miRNA
• Sequence: 78 - AUCAUGCUAUCCCUUUGGAUU - 98
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812