miRBase entry: mdm-MIR10998

Stem-loop mdm-MIR10998


Accession
MI0035638
Description
Malus domestica mdm-MIR10998 precursor miRNA


Sequence

1259 reads, 135.0 reads per million, 29 experiments
ugguugugcacguuugcaguccuagayugaaucccaaggaUAUCAGGUUGAUUUUUGAACUUUaucuuagagagagauugagagaguugaaaaaaaaugggcuaguuagucuuuuuguuucggacaucaggaauauuuuuagaauauuuuaaggauauucuugauguccgaacaaaaagacuaaucagcccauuuuuucccacucucucaaucucucuaaaaaacaaaguucuaaaaucgacccgauaucCUUGGGAUUCAGUCUAGGACUUcaaccuugcauagccauauugccaaucau
((((((((((.(.(((.(((((((((.(((((((((((((((((.((((((((((.(((((((.......(((((((((((((((((.(..((((((((((((.(((((((((((((((.(((((((((((((((((((((((....)))))))))))))))))))))))))))))))))))))).))))))))))))..)))))))))))))))))).......))))))).)))))))))).))))))))))))))))).))))))))).))).).)))))))))).............

Structure
-------------          c u   c         y                 A          U       aucuuag                 u aa            a               u                       a 
             ugguugugca g uug aguccuaga ugaaucccaaggaUAUC GGUUGAUUUU GAACUUU       agagagauugagagagu g  aaaaaaugggcu guuagucuuuuuguu cggacaucaggaauauuuuuaga u
             |||||||||| | ||| ||||||||| ||||||||||||||||| |||||||||| |||||||       ||||||||||||||||| |  |||||||||||| ||||||||||||||| |||||||||||||||||||||||  
             accgauacgu c aac UCAGGAUCU ACUUAGGGUUCcuauag ccagcuaaaa cuugaaa       ucucucuaacucucuca c  uuuuuuacccga uaaucagaaaaacaa gccuguaguucuuauaggaauuu a
uacuaaccguuau          u c   U         G                 c          u       caaaaaa                 - cc            c               -                       u 


Annotation confidence Low
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Genome context
MDC022659.316: 23619-23919 [-]

Database links

Mature mdm-miR10998-5p

Accession MIMAT0056788
Description Malus domestica mdm-miR10998-5p mature miRNA
Sequence 41 - UAUCAGGUUGAUUUUUGAACUUU - 63
Evidence experimental
unknown

Mature mdm-miR10998-3p

Accession MIMAT0043585
Description Malus domestica mdm-miR10998-3p mature miRNA
Sequence 251 - CUUGGGAUUCAGUCUAGGACUU - 272
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812