Stem-loop mdm-MIR10993c

Accession

MI0035640

Description

Malus domestica mdm-MIR10993c precursor miRNA

Sequence

uucuuuauugugucuagaacauaagugguacacuaugugucguuauauuaguacaaacaucuagucauucuacagaacguuuaguuauuuaaguuguuaauuuuuuaacauucuccacuacuuauauagugACAUGUGGUGUACCAUCCUGUguucuaggcacauugaaaa
...((((.(((((((((((((((.((((((((((((((((((((((((.((((.((((.(((.((......)))))..))))............((((((....))))))........)))).))))))))))))))))))))))))..))))))))))))))).))))..

Structure

uuc    u               -a                        u    -----------------------------------c    -a   a  ca 
   uuua ugugucuagaacaua  gugguacacuaugugucguuauau agua                                    aaac  ucu gu  u
   |||| |||||||||||||||  |||||||||||||||||||||||| ||||                                    ||||  ||| ||   
   aagu acacggaucuugUGU  UACCAUGUGGUGUACAgugauaua ucau                                    uuug  aga ca  u
-aa    u               CC                        u    caccucuuacaauuuuuuaauuguugaauuuauuga    ca   -  uc 

Annotation confidence Not enough data

Genome context

MDC001264.593: 854-1024 [+]

Mature mdm-miR10993c

• Accession: MIMAT0043587
• Description: Malus domestica mdm-miR10993c mature miRNA
• Sequence: 132 - ACAUGUGGUGUACCAUCCUGU - 152
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812