Stem-loop mdm-MIR10993e

Accession

MI0035642

Description

Malus domestica mdm-MIR10993e precursor miRNA

Sequence

auucuuuauugugucuagaacauaagugguacacuaugugucguuauauuaguacaaacaucuagucauucuacagaacguuuaguuauuuaaguuguuaauuuuuuaacauucuccacuacuuauauagugACAUGUGGUGUACCAUCCUGUguucuaggcacauugaaaaa
....((((.(((((((((((((((.((((((((((((((((((((((((.((((.((((.(((.((......)))))..))))............((((((....))))))........)))).))))))))))))))))))))))))..))))))))))))))).))))...

Structure

auuc    u               -a                        u    -----------------------------------c    -a   a  ca 
    uuua ugugucuagaacaua  gugguacacuaugugucguuauau agua                                    aaac  ucu gu  u
    |||| |||||||||||||||  |||||||||||||||||||||||| ||||                                    ||||  ||| ||   
    aagu acacggaucuugUGU  UACCAUGUGGUGUACAgugauaua ucau                                    uuug  aga ca  u
-aaa    u               CC                        u    caccucuuacaauuuuuuaauuguugaauuuauuga    ca   -  uc 

Annotation confidence Not enough data

Genome context

MDC025339.12: 1445-1617 [+]

Mature mdm-miR10993e

• Accession: MIMAT0043589
• Description: Malus domestica mdm-miR10993e mature miRNA
• Sequence: 133 - ACAUGUGGUGUACCAUCCUGU - 153
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812