Stem-loop mdm-MIR10993f

Accession

MI0035643

Description

Malus domestica mdm-MIR10993f precursor miRNA

Sequence

790 reads, 51.0 reads per million, 27 experiments

ccgaGAGAAAUUUUUUAUUGUGAuuggaacaagagugcuacaucauguauuuuuauauaagugauagaaaauuuuaauaauacacauaucucaccauuuguauaguuACAUGUGGUGUACCAUCCUGUguuucggucacacugaaaaguuucucuau
...((((((((((((((.(((((((((((((((.(((.((((((((((....(((((((((((..(((....................)))...)))))))))))....)))))))))).))).)).))))))))))))).))))))))))))))..

Structure

ccg              U             -  a   c          auuu           -au   aaauuuuaa 
   aGAGAAAUUUUUUA UGUGAuuggaaca ag gug uacaucaugu    uuauauaagug   aga         u
   |||||||||||||| ||||||||||||| || ||| ||||||||||    |||||||||||   |||          
   ucucuuugaaaagu acacuggcuuugU UC UAC AUGUGGUGUA    gauauguuuac   ucu         a
-ua              c             G  C   C          CAuu           cac   auacacaua 

Annotation confidence Low

Genome context

MDC013698.229: 8957-9113 [+]

Mature mdm-miR10993f-5p

• Accession: MIMAT0056790
• Description: Malus domestica mdm-miR10993f-5p mature miRNA
• Sequence: 5 - GAGAAAUUUUUUAUUGUGA - 23
• Evidence: experimental ; unknown

Mature mdm-miR10993f-3p

• Accession: MIMAT0043590
• Description: Malus domestica mdm-miR10993f-3p mature miRNA
• Sequence: 108 - ACAUGUGGUGUACCAUCCUGU - 128
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812