Stem-loop mdm-MIR10981c

Accession

MI0035646

Description

Malus domestica mdm-MIR10981c precursor miRNA

Sequence

4653 reads, 346.0 reads per million, 27 experiments

gcuugggcuaaggagccaccugaccaauacauaagggucguuggauuuugAUCCAACGACUACAAACAggggguucucuaaaaauuauaaugaugauuguAGCCGUUUAAUCAAAAUCCAAcgauccuuguguguugguaggaggcuccugagcuuggag
..(((((((.(((((((.((((.(((((((((((((((((((((((((((((..((((.((((((.((((((...))))..............)).)))))).))))..))))))))))))))))))))))))))))))))).))))))).)))))))..

Structure

gc       a       a    a                             CC    A      A  --------------    g 
  uugggcu aggagcc ccug ccaauacauaagggucguuggauuuugAU  AACG CUACAA CA              gggg  
  ||||||| ||||||| |||| |||||||||||||||||||||||||||||  |||| |||||| ||              |||| u
  gguucga uccucgg ggau gguuguguguuccuagcAACCUAAAACUA  UUGC GAuguu gu              ucuc  
ga       g       a    -                             AU    C      a  aguaauauuaaaaa    u 

Annotation confidence Low

Genome context

MDC004588.287: 5215-5374 [+]

Mature mdm-miR10981c-5p

• Accession: MIMAT0056793
• Description: Malus domestica mdm-miR10981c-5p mature miRNA
• Sequence: 51 - AUCCAACGACUACAAACA - 68
• Evidence: experimental ; unknown

Mature mdm-miR10981c-3p

• Accession: MIMAT0043593
• Description: Malus domestica mdm-miR10981c-3p mature miRNA
• Sequence: 101 - AGCCGUUUAAUCAAAAUCCAA - 121
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812