Stem-loop mdm-MIR10981d

Accession

MI0035647

Description

Malus domestica mdm-MIR10981d precursor miRNA

Sequence

2742 reads, 210.0 reads per million, 27 experiments

gcuugggcuaaggagccaccugaccaauacauaagggucguuggaUUUUGAUCCAAUGACUACAAacaggggguucucuaaaaauuauaaugaugauuguAGCCGUUUAAUCAAAAUCCAAcgauccuuguguguugguaggaggcuccugagcuuggag
..(((((((.(((((((.((((.(((((((((((((((((((((((((((((..((((.((((((.((((((...))))..............)).)))))).))))..))))))))))))))))))))))))))))))))).))))))).)))))))..

Structure

gc       a       a    a                             CC    A      a  --------------    g 
  uugggcu aggagcc ccug ccaauacauaagggucguuggaUUUUGAU  AAUG CUACAA ca              gggg  
  ||||||| ||||||| |||| |||||||||||||||||||||||||||||  |||| |||||| ||              |||| u
  gguucga uccucgg ggau gguuguguguuccuagcAACCUAAAACUA  UUGC GAuguu gu              ucuc  
ga       g       a    -                             AU    C      a  aguaauauuaaaaa    u 

Annotation confidence Low

Genome context

MDC002503.92: 5954-6113 [+]

Mature mdm-miR10981d-5p

• Accession: MIMAT0056794
• Description: Malus domestica mdm-miR10981d-5p mature miRNA
• Sequence: 46 - UUUUGAUCCAAUGACUACAA - 65
• Evidence: experimental ; unknown

Mature mdm-miR10981d-3p

• Accession: MIMAT0043594
• Description: Malus domestica mdm-miR10981d-3p mature miRNA
• Sequence: 101 - AGCCGUUUAAUCAAAAUCCAA - 121
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812