Stem-loop mdm-MIR11001

Accession

MI0035651

Description

Malus domestica mdm-MIR11001 precursor miRNA

Sequence

aauaucaacuugaacuuugaugugaguauuucacuaucaauuuguuucaacucaaauguacuauucuucaucaauugaaauaggauagagucuaucucuguagagaugaucaagacuucaccauccauaaauuugaucauauaacuuggauaauuugaacuuauuucacaaauuugauaggaagaagucguauauauauccaaguuauaugaacaaauuuguggaugacaaagucuugaucaucucUACAAAGAUGGACUCCACCCUAuuucaguuggugaagaauaguccacuugaguggaaacaaauugauagugaaauucucacaucgaaguucaaguuaauauugagguaagu
(((((.((((((((((((((((((((.(((((((((((((((((((((.((((((.((.(((((((((((((((((((((((((...((((((((((.((((((((((((((((((((...((((((((((((((.((((((((((((((((((.(((.(((.((((............)))).)))))).))...)))))))))))))))).))))))))))))))...)))))))))))))))))))).))))))))))...))))))))))))))))))))))))).)).)))))).))))))))))))))))))))).)))))))))))))))))))).))))).........

Structure

---------     c                    u                     a      a  u                         aua          c                    cac              a                ---  u   a   a    acaaa 
         aauau aacuugaacuuugaugugag auuucacuaucaauuuguuuc acucaa ug acuauucuucaucaauugaaauagg   gagucuaucu uguagagaugaucaagacuu   cauccauaaauuug ucauauaacuuggaua   au uga cuu uuuc     u
         ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||   |||||||||||||| ||||||||||||||||   || ||| ||| ||||      
         uuaua uugaacuugaagcuacacuc uaaagugauaguuaaacaaag ugaguu ac ugauaagaagugguugacuuuAUCC   CUCAGGUAGA ACAUcucuacuaguucugaa   guagguguuuaaac aguauauugaaccuau   ua gcu gaa aagg     u
ugaauggag     a                    u                     g      c  c                         CAC          A                    aca              a                aua  u   -   g    auagu 

Annotation confidence Not enough data

Genome context

MDC008938.426: 3794-4150 [-]

Mature mdm-miR11001

• Accession: MIMAT0043599
• Description: Malus domestica mdm-miR11001 mature miRNA
• Sequence: 247 - UACAAAGAUGGACUCCACCCUA - 268
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812