Stem-loop mdm-MIR11003

Accession

MI0035654

Description

Malus domestica mdm-MIR11003 precursor miRNA

Sequence

ggaauuuuuuuugugugaauuucrgaaauuuguaaauuguguauguucauuguauaucguauaguuauaaaaaaauuuygaauuuuuauuuaaaaauaaucauaaauaauauuugauaaaaayugacuACACAAUAUACGAUGAACAGAcrcaauucacaaauuccuaaaaucuucgucaaaaugaucu
........(((((((...((((..(.(((((((.(((((.((.((((((((((((((.((.((((((...(((((((...)))))))...........((((...........))))......)))))).)).)))))))))))))).)).))))).))))))).)..))))...)).)))))......

Structure

ggaauuuu     -  uga    cr a       a     u  a              c  a      ---------------------------------uaa       u 
        uuuug ug   auuu  g aauuugu aauug gu uguucauuguauau gu uaguua                                    aaaaauu  
        ||||| ||   ||||  | ||||||| ||||| || |||||||||||||| || ||||||                                    ||||||| y
        aaaac gc   uaaa  c uuaaaca uuaac cA ACAAGUAGCAUAUA CA Aucagu                                    uuuuuaa  
--ucuagu     u  uuc    au c       c     r  G              A  C      yaaaaauaguuuauaauaaauacuaauaaaaauuua       g 

Annotation confidence Not enough data

Genome context

MDC017203.93: 41410-41598 [+]

Mature mdm-miR11003

• Accession: MIMAT0043602
• Description: Malus domestica mdm-miR11003 mature miRNA
• Sequence: 129 - ACACAAUAUACGAUGAACAGA - 149
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812