Stem-loop mdm-MIR11005

Accession

MI0035656

Description

Malus domestica mdm-MIR11005 precursor miRNA

Sequence

guugucaccuucagggauguuguucccuuggucuucuacugucggggcauggucgucuucgaugcuuucuuCUACUAUAUGGUCGUACACAUCuagguugcugucauuguuggcaaauuggaaacaaugauagcgacugucgggcaaauuugucauuauugguaaauuggucguacacaucuacugucuggccauccaauuugccaacagugacgucaaccuagauguguaugaccauauaguagaagaaaacauuaaagacgacuaugcccugauaguagaaaaccaaggcgacaacaucccuggagaugagcu
....(((.((((((((((((((((.(((((((.((((((((((((((((((((((((((.((((.(((((((((((((((((((((((((((((((((((.(((((((((((((((((((((......(((((.((.(((..(((.(((((((((....))))))))).)))..)))..))..)))))......))))))))))))))))))))).))))))))))))))))))))))))))))))))))).)))).)))))))))))))))))))))))))).))))))).)))))))))))))))).)))...

Structure

guug   c                c       c                          c    c                                   c                     aacaau     -c  -c   cg   a         u 
    uca cuucagggauguuguu ccuuggu uucuacugucggggcauggucgucuu gaug uuucuuCUACUAUAUGGUCGUACACAUCuagguug ugucauuguuggcaaauugga      gauag  ga  ugu  ggc aauuuguca u
    ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      |||||  ||  |||  ||| |||||||||  
    agu gaggucccuacaacag ggaacca aagaugauagucccguaucagcagaa uuac aaagaagaugauauaccaguauguguagauccaac gcagugacaaccguuuaaccu      cuguc  cu  aca  cug uuaaauggu a
-ucg   a                c       a                          a    a                                   u                     accggu     au  ac   ug   g         u 

Annotation confidence Not enough data

Genome context

MDC019212.115: 11817-12131 [+]

Mature mdm-miR11005

• Accession: MIMAT0043604
• Description: Malus domestica mdm-miR11005 mature miRNA
• Sequence: 72 - CUACUAUAUGGUCGUACACAUC - 93
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812