Stem-loop mdm-MIR171q

Accession

MI0035657

Description

Malus domestica mdm-MIR171q precursor miRNA

Literature search

9 open access papers mention mdm-MIR171q
(40 sentences)

Sequence

agaaagagauggauugggaucaguuugaacgGGAUAUUGGUCCGGUUCAAUAagaaaacagugcucucaaagugcuugagcucggcuuuuugauugagccgugccaauaucacgugucacuguuccucuuaucauauauccc
.......(((((...((((.((((....(((.(((((((((.(((((((((.(((((.(.(.((((...........)))).).).))))).))))))))).))))))))).)))...)))).)))).))))).........

Structure

--agaaaga     auu    u    uuga   G         C         A     a a u    ucaa 
         gaugg   ggga cagu    acg GAUAUUGGU CGGUUCAAU agaaa c g gcuc    a
         |||||   |||| ||||    ||| ||||||||| ||||||||| ||||| | | ||||    g
         cuauu   uccu guca    ugc cuauaaccg gccgaguua uuuuu g c cgag    u
cccuauaua     --c    u    -cug   a         u         g     c g u    uucg 

Annotation confidence Not enough data

Genome context

MDC008623.473: 2694-2835 [+]

Mature mdm-miR171q

• Accession: MIMAT0043605
• Description: Malus domestica mdm-miR171q mature miRNA
• Sequence: 32 - GGAUAUUGGUCCGGUUCAAUA - 52
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812