Stem-loop mdm-MIR10984b

Accession

MI0035661

Description

Malus domestica mdm-MIR10984b precursor miRNA

Sequence

40691 reads, 2887.0 reads per million, 27 experiments

agguucggagcuugauccucuuggaggcugaaaucgcaccuucucgggacagcacacaugaguUUAUGAGGUAAUUGACUGUGAaaucgugguugguuucygucugaggugaaauaucugcaaagugguuuuaagacrawwuygucuuuagguucaaswcagaaaucucggaarccaaccacgauuucacagucaauuaccuyauaaaCUCACGUACGCUGUCCCGAGAAgugugauuucagccuccaagagggucaagcugcgguccc
.((.(((.(((((((((((((((((((((((((((((((.(((((((((((((..((.(((((((((.((((((((((((((((((((((((((((......((((((((......((((.....(((.((((((((......))).))))).)))...)))).))))))))..)))))))))))))))))))))))))))).))))))))).))..)))))))))))))))))))))))))))))))))))))))))))).))).)).

Structure

a  u   g                               c             ac  a         G                            uuucyg        gaaaua    caaag   u     -   ra 
 gg ucg agcuugauccucuuggaggcugaaaucgcac uucucgggacagc  ac ugaguUUAU AGGUAAUUGACUGUGAaaucgugguugg      ucugaggu      ucug     ugg uuuaa gac  w
 || ||| ||||||||||||||||||||||||||||||| |||||||||||||  || ||||||||| ||||||||||||||||||||||||||||      ||||||||      ||||     ||| ||||| |||   
 cc ggc ucgaacugggagaaccuccgacuuuagugug AAGAGCCCUGUCG  UG ACUCaaaua uccauuaacugacacuuuagcaccaacc      aggcucua      agac     acu ggauu cug  w
c  u   g                               -             CA  C         y                            ----ra        -----a    --wsa   u     u   yu 

Annotation confidence Low

Genome context

MDC005862.437: 7931-8199 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR10984b

Mature mdm-miR10984b-5p

• Accession: MIMAT0043609
• Description: Malus domestica mdm-miR10984b-5p mature miRNA
• Sequence: 64 - UUAUGAGGUAAUUGACUGUGA - 84
• Evidence: experimental ; Illumina [1]

Mature mdm-miR10984b-3p

• Accession: MIMAT0043610
• Description: Malus domestica mdm-miR10984b-3p mature miRNA
• Sequence: 209 - CUCACGUACGCUGUCCCGAGAA - 230
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812