Stem-loop mdm-MIR11009

Accession

MI0035662

Description

Malus domestica mdm-MIR11009 precursor miRNA

Sequence

caaauguuagauaccucggcggguggugcauugguugacaugacuccgguggcugcaaagacucuaauugcaaaccgagcacacaAUGCACAACAAUAUGAGGGUGUuggacaaag
....((((.(((((((((....((.((((((((..((......(((.(((...(((((.........))))).))))))))..)))))))).))....))).)))))).))))...

Structure

caaa    a      -   gcgg  g        gu  acauga   c   ggc     aga 
    uguu gauacc ucg    gu gugcauug  ug      cuc ggu   ugcaa   c
    |||| |||||| |||    || ||||||||  ||      ||| |||   |||||   u
    acag uUGUGG AGU    CA CACGUAac  ac      gag cca   acguu   c
-gaa    g      G   AUAA  A        ac  ------   -   --a     aau 

Annotation confidence Not enough data

Genome context

MDC002608.351: 2369-2484 [-]

Mature mdm-miR11009

• Accession: MIMAT0043611
• Description: Malus domestica mdm-miR11009 mature miRNA
• Sequence: 86 - AUGCACAACAAUAUGAGGGUGU - 107
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812