Stem-loop mdm-MIR11012a

Accession

MI0035665

Description

Malus domestica mdm-MIR11012a precursor miRNA

Sequence

292 reads, 26.0 reads per million, 29 experiments

aaugugaagaguuuCAUGUUGAUUGCCAUUAUAAaccaccgggaauaggggugcauugcauagacagcgguaauaaaucugcguauacuaguuugaaaaaggauuucaagggaagaaagaauuaucgacgauuuacagaugagugggacauuaaaaawukaaaauccuucaaugucccccucauacguaaauuguccguaauuuuucuucccuggaauccuucuucaaacuaguauacgcagauuuguuaCCGCUGCCUAUGCAAUGCACCCuuauuuccaauagcuuauaauggcaaucaacaagaaacccuucacauuu
(((((((((.(((((.((((((((((((((((((......(((((((((((((((((((((((.(((((((((((((((((((((((((((((((((.((((((((((.(((((((((((.((((.((((((((((..(((((.((((((((..................)))))))).)))))..)))))))))).))))))))))))))))))))))))).))))))))))))))))))))))))))))))))).)))))))))))))))))))))))......)))))))))))))))))).))))).))))))))).

Structure

-         a     A                  accacc                       a                                 a          a           a    c          ag     u        aaaaawuk 
 aaugugaag guuuC UGUUGAUUGCCAUUAUAA      gggaauaggggugcauugcauag cagcgguaauaaaucugcguauacuaguuugaa aaggauuuca gggaagaaaga uuau gacgauuuac  augag gggacauu        a
 ||||||||| ||||| ||||||||||||||||||      ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||  ||||| ||||||||         
 uuacacuuc caaag acaacuaacgguaauauu      ccuuuauuCCCACGUAACGUAUC GUCGCCauuguuuagacgcauaugaucaaacuu uuccuaaggu cccuucuuuuu aaug cuguuaaaug  uacuc cccuguaa        a
u         c     a                  cgauaa                       C                                 c          -           -    c          ca     c        cuuccuaa 

Annotation confidence Low

Genome context

MDC002388.629: 2376-2696 [+]

Mature mdm-miR11012a-5p

• Accession: MIMAT0056808
• Description: Malus domestica mdm-miR11012a-5p mature miRNA
• Sequence: 15 - CAUGUUGAUUGCCAUUAUAA - 34
• Evidence: experimental ; unknown

Mature mdm-miR11012a-3p

• Accession: MIMAT0043614
• Description: Malus domestica mdm-miR11012a-3p mature miRNA
• Sequence: 251 - CCGCUGCCUAUGCAAUGCACCC - 272
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812