Stem-loop mdm-MIR11012b

Accession

MI0035666

Description

Malus domestica mdm-MIR11012b precursor miRNA

Sequence

uuucauguugauugccauuauaagcuauuggaaauaagggugcauugcauaggcagcaguaacaaaucugcguauacuaguuugaagaaagauuucgaggggagaaaaaauuacugacaauuuacguaugagggggacauugaaggauuucaaggguuucaaauuuuuaaugucccacucaucuguaaaucgucgauaauucuuucuucucuugaaauccuuuuucaaacuaguauacgcagauuuauuaCCGCUGCCUAUGCAAUGCACCCcuauucccggugguuuauaaugacaaucaacaugaaacccuucacauuu
((((((((((((((.((((((((((((((((.((((.((((((((((((((((((((.((((.((((((((((((((((((((((((((.(((((((((((((((((.(((((.((((.(((((((.(((((.((((((((((((.((((.((....)).)))))))))))))))).))))).))))))).)))).))))).))))))))))))))))).)))))))))))))))))))))))))).)))).)))))))))))))))))))).)))).)))))))))))))))).))))))))))))))............

Structure

------------              c                a    a                    a    c                          a                 a     c    a       u     g            g    c  g 
            uuucauguugauug cauuauaagcuauugg aaua gggugcauugcauaggcagc guaa aaaucugcguauacuaguuugaagaa gauuucgaggggagaaa aauua ugac auuuacg augag gggacauugaag auuu aa g
            |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||| ||||| |||||||||||| |||| ||  
            aaaguacaacuaac guaauauuugguggcc uuau CCCACGUAACGUAUCCGUCG Cauu uuuagacgcauaugaucaaacuuuuu cuaaaguucucuucuuu uuaau gcug uaaaugu uacuc cccuguaauuuu uaaa uu g
uuuacacuuccc              a                c    c                    C    a                          c                 c     a    c       c     a            -    c  u 

Annotation confidence Not enough data

Genome context

MDC004277.282: 1174-1494 [-]

Mature mdm-miR11012b

• Accession: MIMAT0043615
• Description: Malus domestica mdm-miR11012b mature miRNA
• Sequence: 251 - CCGCUGCCUAUGCAAUGCACCC - 272
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812