Stem-loop mdm-MIR169m

Accession

MI0035669

Description

Malus domestica mdm-MIR169m precursor miRNA

Literature search

4 open access papers mention mdm-MIR169m
(9 sentences)

Sequence

agagaagugaagagaagagaggucuugcaugagaguuagagccuuguuuggUAGCCAAGGAUGACUUGCCUGcucuaccuagagagacgaacuccacuuguuuguaugaggaaaacuccuguuuggccaggcaggcaucccuggcuaauuugacaggcucuucuuucucaugccaggccuucucuucuuccuugagc
....(((.(((((..((((((((((.(((((((((..(((((((.(((...((((((.(((((.((((((((((((......))))((((((.......))))))...((((....)))).......))))))))))))).))))))....))))))))))...))))))))).))))).)))))))))))))....

Structure

agag   u     ga     -     u         -uu       u   -ugg      A     A        --------cucuaccuagagag      uc 
    aag gaaga  agaga ggucu gcaugagag   agagccu guu    UAGCCA GGAUG CUUGCCUG                      acgaac  c
    ||| |||||  ||||| ||||| |||||||||   ||||||| |||    |||||| ||||| ||||||||                      ||||||  a
    uuc cuucu  ucucu ccgga cguacucuu   ucucgga cag    aucggu ccuac ggacggac                      uguuug  c
cgag   -     --     u     c         ucu       -   uuua      c     -        cgguuuguccucaaaaggagua      uu 

Annotation confidence Not enough data

Genome context

MDC013245.290: 4504-4700 [+]

Mature mdm-miR169m

• Accession: MIMAT0043618
• Description: Malus domestica mdm-miR169m mature miRNA
• Sequence: 52 - UAGCCAAGGAUGACUUGCCUG - 72
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812