Stem-loop mdm-MIR172p

Accession

MI0035671

Description

Malus domestica mdm-MIR172p precursor miRNA

Literature search

14 open access papers mention mdm-MIR172p
(76 sentences)

Sequence

11028 reads, 1729.0 reads per million, 31 experiments

uugacagucguuguuugugggcGUGGCAUCAUCAAGAUUCACacaugcaaguaacugcuaaaguucuuugaaagugAGAAUCUUGAUGAUGCUGCAUcugcaauaaaccacuauau
.....(((.(((..(((((((.((((((((((((((((((.(((...((((.((((.....)))).))))...))).)))))))))))))))))).)))))))..))).)))....

Structure

uugac   c   gu       c                  A   aug    u    g 
     agu guu  uuguggg GUGGCAUCAUCAAGAUUC Cac   caag aacu c
     ||| |||  ||||||| |||||||||||||||||| |||   |||| |||| u
     uca caa  aacgucU CGUCGUAGUAGUUCUAAG gug   guuu uuga a
-uaua   c   au       A                  A   aaa    c    a 

Annotation confidence High

Genome context

MDC020608.143: 3762-3877 [-]

Mature mdm-miR172p-5p

• Accession: MIMAT0056813
• Description: Malus domestica mdm-miR172p-5p mature miRNA
• Sequence: 23 - GUGGCAUCAUCAAGAUUCAC - 42
• Evidence: experimental ; unknown

Mature mdm-miR172p-3p

• Accession: MIMAT0043620
• Description: Malus domestica mdm-miR172p-3p mature miRNA
• Sequence: 77 - AGAAUCUUGAUGAUGCUGCAU - 97
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812